About lab
PURPOSE: This tumor response pharmacodynamic model aims to describe primary lesion shrinkage in non-small cell lung cancer over time and determine if concentration-based exposure metrics for gemcitabi. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagetham2008-pdmodel-tumour-shrinkage-by-gemcitabine-and-carboplatin
Created2026-05-16
Updated2026-05-16
biomodels_ebichemotherapycurateddrug-responsefaithfuloncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "dose_int2_source_parameter",
"label": "Dose Int2 source parameter",
"units": "native SBML value",
"default": -2,
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.dose_int2_source_parameter",
"description": "Dose Int2 source parameter. Maps to bundled SBML parameter `Dose_Int2`."
},
{
"name": "dose_int1_source_parameter",
"label": "Dose Int1 source parameter",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.dose_int1_source_parameter",
"description": "Dose Int1 source parameter. Maps to bundled SBML parameter `Dose_Int1`."
},
{
"name": "dose_source_parameter",
"label": "Dose source parameter",
"units": "native SBML value",
"default": 5203.84,
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.dose_source_parameter",
"description": "Dose source parameter. Maps to bundled SBML parameter `Dose`."
},
{
"name": "initial_tumor_size",
"label": "TumorSize",
"units": "native SBML value",
"default": 6.66,
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.initial_tumor_size",
"description": "Initial TumorSize. Sets the initial value of bundled SBML symbol `TumorSize`."
}
],
"outputs": [
{
"name": "tumor_size",
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.tumor_size",
"description": "TumorSize observable. Maps to SBML symbol `TumorSize`."
},
{
"name": "ce",
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.ce",
"description": "Ce observable. Maps to SBML symbol `Ce`."
},
{
"name": "state",
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"chemotherapy",
"curated",
"drug-response",
"faithful",
"oncology",
"pharmacology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Tham2008 - PDmodel, Tumour shrinkage by gemcitabine and carboplatin Lab",
"models": [
{
"path": "owned/models/oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model",
"alias": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model",
"provenance": {
"owned_path": "owned/models/oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model_state"
],
"from": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.state"
},
{
"to": [
"visualisation.oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model_summary"
],
"from": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model_species_labels"
],
"from": "oncology_sbml_tham2008_pdmodel_tumour_shrinkage_by_gemcitabine_biomd0000000234_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "PURPOSE: This tumor response pharmacodynamic model aims to describe primary lesion shrinkage in non-small cell lung cancer over time and determine if concentration-based exposure metrics for gemcitabi. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.",
"schema_version": "2.0"
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