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Valero2006 Adenine Ternarycycle Lab

About lab

This a model from the article: A kinetic study of a ternary cycle between adenine nucleotides. Valero E, Varón R, García-Carmona F FEBS J.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagevalero2006-adenine-ternarycycle-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_nadh",
        "label": "Initial Nadh",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.initial_nadh",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADH`."
      },
      {
        "name": "initial_model_state_atp",
        "label": "Initial Model State ATP",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.initial_model_state_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
      },
      {
        "name": "initial_model_state_adp",
        "label": "Initial Model State ADP",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.initial_model_state_adp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP`."
      },
      {
        "name": "initial_model_state_pyr",
        "label": "Initial Model State Pyr",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.initial_model_state_pyr",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pyr`."
      },
      {
        "name": "initial_model_state_lac",
        "label": "Initial Model State Lac",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.initial_model_state_lac",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Lac`."
      },
      {
        "name": "initial_model_state_amp",
        "label": "Initial Model State AMP",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.initial_model_state_amp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AMP`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.species_labels"
      },
      {
        "name": "nadh",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.nadh"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.atp"
      },
      {
        "name": "adp",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.adp"
      },
      {
        "name": "pyr",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.pyr"
      },
      {
        "name": "lac",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.lac"
      },
      {
        "name": "amp",
        "maps_to": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.amp"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Valero2006 Adenine Ternarycycle Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model",
      "alias": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model_state"
      ],
      "from": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model_summary"
      ],
      "from": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model_species_labels"
      ],
      "from": "systemsbiology_sbml_valero2006_adenine_ternarycycle_biomd0000000231_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: A kinetic study of a ternary cycle between adenine nucleotides. Valero E, Varón R, García-Carmona F FEBS J.",
  "schema_version": "2.0"
}

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