About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagenakakuki2010-cellfatedecision-mechanistic-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_egf",
"label": "Initial EGF",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.initial_egf",
"description": "Initial level of EGF. Maps to SBML symbol `EGF`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_heregulin",
"label": "Initial heregulin",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.initial_heregulin",
"description": "Initial level of heregulin. Maps to SBML symbol `HRG`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "cytosolic_phosphorylated_erk",
"label": "cytosolic phosphorylated ERK",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.cytosolic_phosphorylated_erk",
"description": "cytosolic phosphorylated ERK. Maps to SBML symbol `ERK_c` and is emitted in native SBML units."
},
{
"name": "p_erk_c",
"label": "P ERK C",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.p_erk_c",
"description": "P ERK C. Maps to SBML symbol `pERK_c` and is emitted in native SBML units."
},
{
"name": "pp_erk_c",
"label": "Pp ERK C",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.pp_erk_c",
"description": "Pp ERK C. Maps to SBML symbol `ppERK_c` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk"
],
"title": "Nakakuki2010_CellFateDecision_Mechanistic Lab",
"models": [
{
"path": "owned/models/signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model",
"alias": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model_state"
],
"from": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.state"
},
{
"to": [
"visualisation.signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model_summary"
],
"from": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model_species_labels"
],
"from": "signaling_sbml_nakakuki2010_cellfatedecision_mechanistic_biomd0000000250_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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