BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Olsen2003 Peroxidase Lab

About lab

Notes of the BioModels curators: The current model reproduce the figure 7, panel B of the paper. Note that there is a typo in the figure.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageolsen2003-peroxidase-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_na_drad",
        "label": "Initial Na Drad",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_na_drad",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADrad`."
      },
      {
        "name": "initial_nad_hres",
        "label": "Initial Nad Hres",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_nad_hres",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADHres`."
      },
      {
        "name": "initial_nadh",
        "label": "Initial Nadh",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_nadh",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADH`."
      },
      {
        "name": "initial_nad2",
        "label": "Initial Nad2",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_nad2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD2`."
      },
      {
        "name": "initial_model_state_nad",
        "label": "Initial Model State Nad",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_model_state_nad",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD`."
      },
      {
        "name": "initial_ar_h",
        "label": "Initial Ar H",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_ar_h",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ArH`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.species_labels"
      },
      {
        "name": "na_drad",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.na_drad"
      },
      {
        "name": "nad_hres",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nad_hres"
      },
      {
        "name": "nadh",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nadh"
      },
      {
        "name": "nad2",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nad2"
      },
      {
        "name": "nad",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nad"
      },
      {
        "name": "ar_h",
        "maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.ar_h"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Olsen2003 Peroxidase Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model",
      "alias": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model_state"
      ],
      "from": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model_summary"
      ],
      "from": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model_species_labels"
      ],
      "from": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Notes of the BioModels curators: The current model reproduce the figure 7, panel B of the paper. Note that there is a typo in the figure.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.