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Smith2004 - Minimal Haemodynamic System Including Valve Mechanics Lab

About lab

Source-faithful physiology lab for Smith Chase 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagesmith2004-minimal-haemodynamic-system-including-valve-mechanics
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_rate_constant_q_av",
        "label": "Initial Rate Constant Q Av (source Q_av)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.initial_rate_constant_q_av",
        "description": "Initial value for Rate Constant Q Av (source Q_av). Maps to source symbol `Q_av`. Units: mL_per_second. Naming evidence: units identify a rate constant but not a fuller biological role.",
        "accepted_units": [
          "mL_per_second"
        ]
      },
      {
        "name": "initial_rate_constant_q_mt",
        "label": "Initial Rate Constant Q Mt (source Q_mt)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.initial_rate_constant_q_mt",
        "description": "Initial value for Rate Constant Q Mt (source Q_mt). Maps to source symbol `Q_mt`. Units: mL_per_second. Naming evidence: units identify a rate constant but not a fuller biological role.",
        "accepted_units": [
          "mL_per_second"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.variable_labels"
      },
      {
        "name": "rate_constant_q_av",
        "label": "Rate Constant Q Av (source Q_av)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.rate_constant_q_av",
        "description": "Rate Constant Q Av (source Q_av). Maps to source symbol `Q_av`. Units: mL_per_second. Naming evidence: units identify a rate constant but not a fuller biological role."
      },
      {
        "name": "rate_constant_q_mt",
        "label": "Rate Constant Q Mt (source Q_mt)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.rate_constant_q_mt",
        "description": "Rate Constant Q Mt (source Q_mt). Maps to source symbol `Q_mt`. Units: mL_per_second. Naming evidence: units identify a rate constant but not a fuller biological role."
      },
      {
        "name": "rate_constant_q_pv",
        "label": "Rate Constant Q Pv (source Q_pv)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.rate_constant_q_pv",
        "description": "Rate Constant Q Pv (source Q_pv). Maps to source symbol `Q_pv`. Units: mL_per_second. Naming evidence: units identify a rate constant but not a fuller biological role."
      },
      {
        "name": "rate_constant_q_tc",
        "label": "Rate Constant Q Tc (source Q_tc)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.rate_constant_q_tc",
        "description": "Rate Constant Q Tc (source Q_tc). Maps to source symbol `Q_tc`. Units: mL_per_second. Naming evidence: units identify a rate constant but not a fuller biological role."
      },
      {
        "name": "model_variable_l_av",
        "label": "Model Variable L Av (source L_av)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.model_variable_l_av",
        "description": "Model Variable L Av (source L_av). Maps to source symbol `L_av`. Units: kPa_second2_per_mL. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_variable_l_mt",
        "label": "Model Variable L Mt (source L_mt)",
        "maps_to": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.model_variable_l_mt",
        "description": "Model Variable L Mt (source L_mt). Maps to source symbol `L_mt`. Units: kPa_second2_per_mL. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Smith2004 - Minimal Haemodynamic System Including Valve Mechanics Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model",
      "alias": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model",
      "parameters": {
        "model_path": "data/smith_chase_nokes_shaw_wake_2004.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model_state"
      ],
      "from": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model_summary"
      ],
      "from": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model_trajectory"
      ],
      "from": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model_variable_labels"
      ],
      "from": "physiology_cellml_smith_chase_2004_smithchasenokesshawwake2004_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Smith Chase 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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