About lab
Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageschwarz2018-cdk-activity-threshold-determines-pa
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicell-cycle-signalingvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_myc_transcription_factor",
"label": "Initial MYC transcription factor",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.initial_myc_transcription_factor",
"description": "Initial level of MYC transcription factor. Maps to SBML symbol `Myc`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "phosphorylated_rb",
"label": "Phosphorylated Rb",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.phosphorylated_rb",
"description": "Phosphorylated Rb. Maps to SBML symbol `Phosphorylated_Rb` and is emitted in native SBML units."
},
{
"name": "rb_e2f_complex",
"label": "Rb E2F Complex",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.rb_e2f_complex",
"description": "Rb E2F Complex. Maps to SBML symbol `Rb_E2F_complex` and is emitted in native SBML units."
},
{
"name": "myc_transcription_factor",
"label": "MYC transcription factor",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.myc_transcription_factor",
"description": "MYC transcription factor. Maps to SBML symbol `Myc` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cell-cycle-signaling"
],
"title": "Schwarz2018-Cdk Activity Threshold Determines Passage through the Restriction Point Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model_state"
],
"from": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.state"
},
{
"to": [
"visualisation.signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model_summary"
],
"from": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model_species_labels"
],
"from": "signaling_sbml_schwarz2018_cdk_activity_threshold_determines_pa_biomd0000000918_model.species_labels"
}
],
"package": "schwarz2018-cdk-activity-threshold-determines-pa",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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