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Caruso2020 - Activation of the alternative complement pathway and effects on hemolysis Lab

About lab

Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagecaruso2020-activation-of-the-alternative-complement-pathway-and
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicomplementvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_complement_c3",
        "label": "Initial complement C3",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.initial_complement_c3",
        "description": "Initial level of complement C3. Maps to SBML symbol `C3`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "nf_complement_c3b",
        "label": "Nf complement C3b",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.nf_complement_c3b",
        "description": "Nf complement C3b. Maps to SBML symbol `nfC3b` and is emitted in native SBML units."
      },
      {
        "name": "complement_c3_h2o_fluid",
        "label": "complement C3 H2O Fluid",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.complement_c3_h2o_fluid",
        "description": "complement C3 H2O Fluid. Maps to SBML symbol `C3_H2O__fluid` and is emitted in native SBML units."
      },
      {
        "name": "complement_c3_h2o_b_fluid",
        "label": "complement C3 H2O B Fluid",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.complement_c3_h2o_b_fluid",
        "description": "complement C3 H2O B Fluid. Maps to SBML symbol `C3_H2O_B_fluid` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "complement"
  ],
  "title": "Caruso2020 - Activation of the alternative complement pathway and effects on hemolysis Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model",
      "alias": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model_state"
      ],
      "from": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model_summary"
      ],
      "from": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model_species_labels"
      ],
      "from": "signaling_sbml_caruso2020_activation_of_the_alternative_complem_model2109110001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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