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Suh2004 Kcnq Regulation Lab

About lab

The model reproduces FIG 11A and FIG 11B of the paper. However, please note that FIG 11B is a plot of normalised amounts versus time.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesuh2004-kcnq-regulation-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp_c",
        "label": "Initial ATP C",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.initial_atp_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP_C`."
      },
      {
        "name": "initial_pi_m",
        "label": "Initial Pi M",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.initial_pi_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PI_M`."
      },
      {
        "name": "initial_pip2_m",
        "label": "Initial Pip2 M",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.initial_pip2_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP2_M`."
      },
      {
        "name": "initial_mg2_c",
        "label": "Initial MG2 C",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.initial_mg2_c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mg2_C`."
      },
      {
        "name": "initial_pip_m",
        "label": "Initial Pip M",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.initial_pip_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP_M`."
      },
      {
        "name": "initial_ggdp_m",
        "label": "Initial Ggdp M",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.initial_ggdp_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GGDP_M`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.species_labels"
      },
      {
        "name": "atp_c",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.atp_c"
      },
      {
        "name": "pi_m",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.pi_m"
      },
      {
        "name": "pip2_m",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.pip2_m"
      },
      {
        "name": "mg2_c",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.mg2_c"
      },
      {
        "name": "pip_m",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.pip_m"
      },
      {
        "name": "ggdp_m",
        "maps_to": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.ggdp_m"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Suh2004 Kcnq Regulation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model",
      "alias": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model_state"
      ],
      "from": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model_summary"
      ],
      "from": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model_species_labels"
      ],
      "from": "systemsbiology_sbml_suh2004_kcnq_regulation_biomd0000000081_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces FIG 11A and FIG 11B of the paper. However, please note that FIG 11B is a plot of normalised amounts versus time.",
  "schema_version": "2.0"
}

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