BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Bagci2008 No Apoptosis Modela Lab

About lab

This a model from the article: Computational insights on the competing effects of nitric oxide in regulatingapoptosis. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebagci2008-no-apoptosis-modela-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_onoo_m",
        "label": "Initial Onoo M",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_onoo_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ONOO_m`."
      },
      {
        "name": "initial_o_2_m",
        "label": "Initial O 2 M",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_o_2_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `O_2m`."
      },
      {
        "name": "initial_no_2",
        "label": "Initial No 2",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_no_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NO_2`."
      },
      {
        "name": "initial_model_state_no",
        "label": "Initial Model State No",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_model_state_no",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NO`."
      },
      {
        "name": "initial_n2_o3",
        "label": "Initial N2 O3",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_n2_o3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `N2O3`."
      },
      {
        "name": "initial_gsno",
        "label": "Initial Gsno",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_gsno",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GSNO`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.species_labels"
      },
      {
        "name": "onoo_m",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.onoo_m"
      },
      {
        "name": "o_2_m",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.o_2_m"
      },
      {
        "name": "no_2",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.no_2"
      },
      {
        "name": "model_state_no",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.model_state_no"
      },
      {
        "name": "n2_o3",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.n2_o3"
      },
      {
        "name": "gsno",
        "maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.gsno"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bagci2008 No Apoptosis Modela Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model",
      "alias": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model_state"
      ],
      "from": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model_summary"
      ],
      "from": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Computational insights on the competing effects of nitric oxide in regulatingapoptosis. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.