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COVID-19 Immunotherapy 2022 Treatment Model Lab

About lab

Single-model lab wrapper for COVID-19 immunotherapy A mathematical model. The pandemic caused by SARS-CoV-2 is responsible for terrible health devastation with profoundly harmful consequences for the economic, social and political activities of communities on a global scale. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagecovid-19-immunotherapy-2022-treatment-model-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "virus_clearance_rate",
        "label": "Virus Clearance Rate",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.virus_clearance_rate"
      },
      {
        "name": "virus_production_rate",
        "label": "Virus Production Rate",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.virus_production_rate"
      },
      {
        "name": "infected_cell_death_rate",
        "label": "Infected Cell Death Rate",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.infected_cell_death_rate"
      },
      {
        "name": "immune_activation_rate",
        "label": "Immune Activation Rate",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.immune_activation_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.species_labels"
      },
      {
        "name": "treated_viral_load",
        "label": "Treated viral load",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_viral_load"
      },
      {
        "name": "treated_free_virus",
        "label": "Treated free virus",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_free_virus"
      },
      {
        "name": "treated_infected_epithelial_cells",
        "label": "Treated infected epithelial cells",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_infected_epithelial_cells"
      },
      {
        "name": "treated_activated_neutrophils",
        "label": "Treated activated neutrophils",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_activated_neutrophils"
      },
      {
        "name": "treated_interleukin_12",
        "label": "Treated interleukin 12",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_interleukin_12"
      },
      {
        "name": "treated_antibody_response",
        "label": "Treated antibody response",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_antibody_response"
      },
      {
        "name": "treated_b_cells",
        "label": "Treated B cells",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treated_b_cells"
      },
      {
        "name": "treatment_inhibition_signal",
        "label": "Treatment inhibition signal",
        "maps_to": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.treatment_inhibition_signal"
      }
    ]
  },
  "title": "COVID-19 Immunotherapy 2022 Treatment Model Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model",
      "alias": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model",
      "parameters": {
        "model_path": "data/MODEL2202230002.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model_state"
      ],
      "from": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model_summary"
      ],
      "from": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model_species_labels"
      ],
      "from": "epidemiology_sbml_covid_19_immunotherapy_a_mathematical_model_model2202230002_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for COVID-19 immunotherapy A mathematical model. The pandemic caused by SARS-CoV-2 is responsible for terrible health devastation with profoundly harmful consequences for the economic, social and political activities of communities on a global scale. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
  "schema_version": "2.0"
}

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