Lai2007_O2_Transport_Metabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 8.198857,
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_2",
        "units": "native SBML value",
        "default": 40.98942,
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.initial_metabolic_pathway_state_2",
        "description": "Initial condition for metabolic pathway state 2. Maps to bundled SBML symbol `PCr`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_adp",
        "units": "native SBML value",
        "default": 0.001142,
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.initial_adp",
        "description": "Initial condition for adp. Maps to bundled SBML symbol `ADP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_4",
        "units": "native SBML value",
        "default": 1.01056,
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.initial_metabolic_pathway_state_4",
        "description": "Initial condition for metabolic pathway state 4. Maps to bundled SBML symbol `Cr`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_5",
        "units": "native SBML value",
        "default": 0.5,
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.initial_metabolic_pathway_state_5",
        "description": "Initial condition for metabolic pathway state 5. Maps to bundled SBML symbol `Pi`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.atp"
      },
      {
        "name": "metabolic_pathway_state_2",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.metabolic_pathway_state_2"
      },
      {
        "name": "adp",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.adp"
      },
      {
        "name": "metabolic_pathway_state_4",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.metabolic_pathway_state_4"
      },
      {
        "name": "metabolic_pathway_state_5",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.metabolic_pathway_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.observable_labels"
      }
    ]
  },
  "title": "Lai2007_O2_Transport_Metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model",
      "alias": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model",
      "parameters": {
        "model_path": "data/BIOMD0000000248.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model_observable_values"
      ],
      "from": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model_run_summary"
      ],
      "from": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model_observable_labels"
      ],
      "from": "metabolism_sbml_lai2007_o2_transport_metabolism_biomd0000000248_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This file describes the SBML version of the mathematical model in the following journal article: Linking Pulmonary Oxygen Uptake, Muscle Oxygen Utilization and Cellular Metabolism during Exercise, Ann. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}