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Nagashima2002 Simulating Blood Coagulation Inhibitory Effects Lab

About lab

Mathematical model of blood coagulation and the effects of inhibitors of Xa, Va:Xa and IIa. It can be used to explore systemsbiology nagashima2002 simulating blood coagulation inhib dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagenagashima2002-simulating-blood-coagulation-inhibitory-effects-la
Created2026-05-17
Updated2026-05-17
pharmacologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_tf_vi_ia",
        "label": "Initial Tf Vi Ia",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.initial_tf_vi_ia",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TF_VIIa`."
      },
      {
        "name": "initial_xa_inact",
        "label": "Initial Xa Inact",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.initial_xa_inact",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa_inact`."
      },
      {
        "name": "initial_xa_inhibitor",
        "label": "Initial Xa Inhibitor",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.initial_xa_inhibitor",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa_Inhibitor`."
      },
      {
        "name": "initial_xa_xa_inhibitor",
        "label": "Initial Xa Xa Inhibitor",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.initial_xa_xa_inhibitor",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa_Xa_Inhibitor`."
      },
      {
        "name": "initial_xa_viii",
        "label": "Initial Xa Viii",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.initial_xa_viii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa_VIII`."
      },
      {
        "name": "initial_xa_v",
        "label": "Initial Xa V",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.initial_xa_v",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa_V`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.species_labels"
      },
      {
        "name": "tf_vi_ia",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.tf_vi_ia"
      },
      {
        "name": "xa_inact",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.xa_inact"
      },
      {
        "name": "xa_inhibitor",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.xa_inhibitor"
      },
      {
        "name": "xa_xa_inhibitor",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.xa_xa_inhibitor"
      },
      {
        "name": "xa_viii",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.xa_viii"
      },
      {
        "name": "xa_v",
        "maps_to": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.xa_v"
      }
    ]
  },
  "tags": [
    "pharmacology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Nagashima2002 Simulating Blood Coagulation Inhibitory Effects Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model",
      "alias": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model_state"
      ],
      "from": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model_summary"
      ],
      "from": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model_species_labels"
      ],
      "from": "systemsbiology_sbml_nagashima2002_simulating_blood_coagulation_inhib_biomd0000000747_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Mathematical model of blood coagulation and the effects of inhibitors of Xa, Va:Xa and IIa. It can be used to explore systemsbiology nagashima2002 simulating blood coagulation inhib dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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