Physiome 3e0 - Pacemaking Substantia Nigra Neurons Simple Based Spherical Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_y_xm",
        "label": "Initial Model State Y Xm (source y_xm)",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.initial_model_state_y_xm",
        "description": "Initial value for Model State Y Xm (source y_xm). Maps to source symbol `y_xm`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_intracellular_sodium",
        "label": "Initial Intracellular Sodium",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.initial_intracellular_sodium",
        "description": "Initial value for Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `I_NaHCN`. Units: pA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na",
        "label": "Sodium Current I Na",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.sodium_current_i_na",
        "description": "Sodium Current I Na. Maps to source symbol `I_Na`. Units: pA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_nalk",
        "label": "Sodium Current I Nalk",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.sodium_current_i_nalk",
        "description": "Sodium Current I Nalk. Maps to source symbol `I_Nalk`. Units: pA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_nk",
        "label": "Sodium Current I Nk",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.sodium_current_i_nk",
        "description": "Sodium Current I Nk. Maps to source symbol `I_nk`. Units: pA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_xm",
        "label": "Alpha Xm",
        "maps_to": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.alpha_xm",
        "description": "Alpha Xm. Maps to source symbol `alpha_xm`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 3e0 - Pacemaking Substantia Nigra Neurons Simple Based Spherical Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model",
      "alias": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model",
      "parameters": {
        "model_path": "data/francis_garcia_middleton_2012_spherical.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model_state"
      ],
      "from": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model_summary"
      ],
      "from": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model_trajectory"
      ],
      "from": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model_variable_labels"
      ],
      "from": "physiology_cellml_a_model_for_pacemaking_in_substantia_nigra_neuro_3e0_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry). Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}