About lab
Clean Biosimulant lab for systems signaling model: Zarnitsina1996 - Reactions of the Intrinsic Pathway of Blood Coagulation. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
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Metadata
Packagezarnitsina1996-reactions-of-the-intrinsic-pathway-of-blood-coagu
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicoagulationphysiologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_ix_state",
"label": "Initial source-defined IX state",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.initial_source_defined_ix_state",
"description": "Initial level of source-defined IX state. Maps to SBML symbol `IX`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "activated_clotting_factor_ix",
"label": "activated clotting factor IX",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.activated_clotting_factor_ix",
"description": "activated clotting factor IX. Maps to SBML symbol `IXa` and is emitted in native SBML units."
},
{
"name": "activated_clotting_factor_xi",
"label": "activated clotting factor XI",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.activated_clotting_factor_xi",
"description": "activated clotting factor XI. Maps to SBML symbol `XIa` and is emitted in native SBML units."
},
{
"name": "activated_clotting_factor_ix_at",
"label": "activated clotting factor IX AT",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.activated_clotting_factor_ix_at",
"description": "activated clotting factor IX AT. Maps to SBML symbol `IXa_AT` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"coagulation",
"physiology"
],
"title": "Zarnitsina1996 - Reactions of the Intrinsic Pathway of Blood Coagulation Lab",
"models": [
{
"path": "owned/models/signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model",
"alias": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model_state"
],
"from": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model_summary"
],
"from": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model_species_labels"
],
"from": "signaling_sbml_zarnitsina1996_reactions_of_the_intrinsic_pathwa_model1806140001_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Zarnitsina1996 - Reactions of the Intrinsic Pathway of Blood Coagulation. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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