About lab
Source-faithful physiology lab for Li, Bertram and Rinzel, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageli1996-modeling-n-methyl-d-aspartate-induced-bursting-dopamine-l
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium",
"label": "Initial Calcium",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.initial_calcium",
"description": "Initial value for Calcium. Maps to source symbol `Ca`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
},
{
"name": "initial_dendritic_compartment_na",
"label": "Initial Dendritic Compartment Na",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.initial_dendritic_compartment_na",
"description": "Initial value for Dendritic Compartment Na. Maps to source symbol `Na`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.variable_labels"
},
{
"name": "membrane_capacitance",
"label": "Membrane Capacitance",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.membrane_capacitance",
"description": "Membrane Capacitance. Maps to source symbol `C_m`. Units: uF_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha",
"label": "Alpha",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.alpha",
"description": "Alpha. Maps to source symbol `alpha`. Units: mMcm2_per_uAs. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi_na",
"label": "Phi Na",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.phi_na",
"description": "Phi Na. Maps to source symbol `phi_Na`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "phi_na_eq",
"label": "Phi Na Eq",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.phi_na_eq",
"description": "Phi Na Eq. Maps to source symbol `phi_Na_eq`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium",
"label": "Calcium",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.calcium",
"description": "Calcium. Maps to source symbol `Ca`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "dendritic_compartment_na",
"label": "Dendritic Compartment Na",
"maps_to": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.dendritic_compartment_na",
"description": "Dendritic Compartment Na. Maps to source symbol `Na`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Li1996 - Modeling N Methyl D Aspartate Induced Bursting Dopamine Lab",
"models": [
{
"path": "owned/models/physiology_cellml_li_bertram_and_rinzel_1996_2ea_model",
"alias": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model",
"parameters": {
"model_path": "data/li_1996_complex.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_li_bertram_and_rinzel_1996_2ea_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_li_bertram_and_rinzel_1996_2ea_model_state"
],
"from": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.state"
},
{
"to": [
"visualisation.physiology_cellml_li_bertram_and_rinzel_1996_2ea_model_summary"
],
"from": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_li_bertram_and_rinzel_1996_2ea_model_trajectory"
],
"from": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_li_bertram_and_rinzel_1996_2ea_model_variable_labels"
],
"from": "physiology_cellml_li_bertram_and_rinzel_1996_2ea_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Li, Bertram and Rinzel, 1996. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
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