Buchel2013 Dopaminergic Nerve Cell Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_biogenesis_mitochondria",
        "label": "Initial Biogenesis Mitochondria",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.initial_biogenesis_mitochondria",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `BiogenesisMitochondria`."
      },
      {
        "name": "initial_mt_dna_defect",
        "label": "Initial Mt DNA Defect",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.initial_mt_dna_defect",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mtDNADefect`."
      },
      {
        "name": "initial_damaged_protein",
        "label": "Initial Damaged Protein",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.initial_damaged_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `damagedProtein`."
      },
      {
        "name": "initial_model_state_nad",
        "label": "Initial Model State Nad",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.initial_model_state_nad",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD`."
      },
      {
        "name": "initial_adp_pi",
        "label": "Initial ADP Pi",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.initial_adp_pi",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP_P`."
      },
      {
        "name": "initial_complex_damaged_protein_trap1_p",
        "label": "Initial Complex Damaged Protein Trap1 P",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.initial_complex_damaged_protein_trap1_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Complex_damagedProtein_TRAP1P`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.species_labels"
      },
      {
        "name": "biogenesis_mitochondria",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.biogenesis_mitochondria"
      },
      {
        "name": "mt_dna_defect",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.mt_dna_defect"
      },
      {
        "name": "damaged_protein",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.damaged_protein"
      },
      {
        "name": "nad",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.nad"
      },
      {
        "name": "adp_pi",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.adp_pi"
      },
      {
        "name": "complex_damaged_protein_trap1_p",
        "maps_to": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.complex_damaged_protein_trap1_p"
      }
    ]
  },
  "tags": [
    "neuroscience",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Buchel2013 Dopaminergic Nerve Cell Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model",
      "alias": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model_state"
      ],
      "from": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model_summary"
      ],
      "from": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_b_chel2013_dopaminergic_nerve_cell_model_model1302200000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Systems Biology BChel2013Dopaminergic Nerve Cell Model Model1302200000Model models core biological dynamics as a OTHER simulation curated from biomodels_ebi (biomodels_ebi:MODEL1302200000), focused on systemsbi. When you run it, you can track state over time and compare response patterns across parameter settings.",
  "schema_version": "2.0"
}