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Smithae2002 Rantransport Lab

About lab

The model reproduces the compartmental model for Ran transport as depicted in Fig 3 of the paper. It can be used to explore systemsbiology smithae2002 rantransport BioModels0000000164 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesmithae2002-rantransport-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_carrier_cytosol",
        "label": "Initial Carrier Cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.initial_carrier_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Carrier_Cytosol`."
      },
      {
        "name": "initial_carrier_ran_gtp_nucleus",
        "label": "Initial Carrier Ran Gtp Nucleus",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.initial_carrier_ran_gtp_nucleus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Carrier_RanGTP_Nucleus`."
      },
      {
        "name": "initial_carrier_nucleus",
        "label": "Initial Carrier Nucleus",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.initial_carrier_nucleus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Carrier_Nucleus`."
      },
      {
        "name": "initial_ran_bp1_cytosol",
        "label": "Initial Ran BP1 Cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.initial_ran_bp1_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RanBP1_Cytosol`."
      },
      {
        "name": "initial_ran_gdp_cytosol",
        "label": "Initial Ran Gdp Cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.initial_ran_gdp_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RanGDP_Cytosol`."
      },
      {
        "name": "initial_ntf2_ran_gdp_cytosol",
        "label": "Initial Ntf2 Ran Gdp Cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.initial_ntf2_ran_gdp_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NTF2_RanGDP_Cytosol`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.species_labels"
      },
      {
        "name": "carrier_cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.carrier_cytosol"
      },
      {
        "name": "carrier_ran_gtp_nucleus",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.carrier_ran_gtp_nucleus"
      },
      {
        "name": "carrier_nucleus",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.carrier_nucleus"
      },
      {
        "name": "ran_bp1_cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.ran_bp1_cytosol"
      },
      {
        "name": "ran_gdp_cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.ran_gdp_cytosol"
      },
      {
        "name": "ntf2_ran_gdp_cytosol",
        "maps_to": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.ntf2_ran_gdp_cytosol"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Smithae2002 Rantransport Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model",
      "alias": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model_state"
      ],
      "from": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model_summary"
      ],
      "from": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model_species_labels"
      ],
      "from": "systemsbiology_sbml_smithae2002_rantransport_biomd0000000164_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the compartmental model for Ran transport as depicted in Fig 3 of the paper. It can be used to explore systemsbiology smithae2002 rantransport BioModels0000000164 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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