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Friel1995 - Calcium Dynamics 358 Lab

About lab

Source-faithful physiology lab for Friel, 1995. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagefriel1995-calcium-dynamics-358-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_s",
        "label": "Initial Ca S",
        "maps_to": "physiology_cellml_friel_1995_358_model.initial_ca_s",
        "description": "Initial value for Ca S. Maps to source symbol `Ca_s`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "nanomolar"
        ]
      },
      {
        "name": "initial_intracellular_calcium",
        "label": "Initial Intracellular Calcium",
        "maps_to": "physiology_cellml_friel_1995_358_model.initial_intracellular_calcium",
        "description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_friel_1995_358_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_friel_1995_358_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_friel_1995_358_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_friel_1995_358_model.variable_labels"
      },
      {
        "name": "ca_s",
        "label": "Ca S",
        "maps_to": "physiology_cellml_friel_1995_358_model.ca_s",
        "description": "Ca S. Maps to source symbol `Ca_s`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_friel_1995_358_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_i_ss",
        "label": "Ca I Ss",
        "maps_to": "physiology_cellml_friel_1995_358_model.ca_i_ss",
        "description": "Ca I Ss. Maps to source symbol `Ca_i_ss`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_s_ss",
        "label": "Ca S Ss",
        "maps_to": "physiology_cellml_friel_1995_358_model.ca_s_ss",
        "description": "Ca S Ss. Maps to source symbol `Ca_s_ss`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "extracellular_calcium",
        "label": "Extracellular Calcium",
        "maps_to": "physiology_cellml_friel_1995_358_model.extracellular_calcium",
        "description": "Extracellular Calcium. Maps to source symbol `Ca_o`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "gamma",
        "label": "Gamma",
        "maps_to": "physiology_cellml_friel_1995_358_model.gamma",
        "description": "Gamma. Maps to source symbol `gamma`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Friel1995 - Calcium Dynamics 358 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_friel_1995_358_model",
      "alias": "physiology_cellml_friel_1995_358_model",
      "parameters": {
        "model_path": "data/friel_1995.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_friel_1995_358_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_friel_1995_358_model_state"
      ],
      "from": "physiology_cellml_friel_1995_358_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_friel_1995_358_model_summary"
      ],
      "from": "physiology_cellml_friel_1995_358_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_friel_1995_358_model_trajectory"
      ],
      "from": "physiology_cellml_friel_1995_358_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_friel_1995_358_model_variable_labels"
      ],
      "from": "physiology_cellml_friel_1995_358_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Friel, 1995. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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