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Reynolds2006 Reduced Model Of The Acute Inflammatory Response Lab

About lab

Angela Reynolds, Jonathan Rubin, Gilles Clermont, Judy Day, Yoram Vodovotz & G. It can be used to explore systemsbiology reynolds2006 reduced of the acute dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagereynolds2006-reduced-model-of-the-acute-inflammatory-response-la
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_anti_inflammatory_mediators_c_a",
        "label": "Initial Anti Inflammatory Mediators C A",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.initial_anti_inflammatory_mediators_c_a",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `C_A`."
      },
      {
        "name": "initial_activated_phagocytes_nstar",
        "label": "Initial Activated Phagocytes Nstar",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.initial_activated_phagocytes_nstar",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Nstar`."
      },
      {
        "name": "initial_pathogen_p",
        "label": "Initial Pathogen P",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.initial_pathogen_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P`."
      },
      {
        "name": "initial_tissue_damage_d",
        "label": "Initial Tissue Damage D",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.initial_tissue_damage_d",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `D`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.species_labels"
      },
      {
        "name": "anti_inflammatory_mediators_c_a",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.anti_inflammatory_mediators_c_a"
      },
      {
        "name": "activated_phagocytes_nstar",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.activated_phagocytes_nstar"
      },
      {
        "name": "pathogen_p",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.pathogen_p"
      },
      {
        "name": "tissue_damage_d",
        "maps_to": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.tissue_damage_d"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Reynolds2006 Reduced Model Of The Acute Inflammatory Response Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model",
      "alias": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model_state"
      ],
      "from": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model_summary"
      ],
      "from": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model_species_labels"
      ],
      "from": "systemsbiology_sbml_reynolds2006_reduced_model_of_the_acute_inflamma_biomd0000000714_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Angela Reynolds, Jonathan Rubin, Gilles Clermont, Judy Day, Yoram Vodovotz & G. It can be used to explore systemsbiology reynolds2006 reduced of the acute dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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