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Begitt2014 - STAT1 cooperative DNA binding - double GAS polymer model Lab

About lab

Begitt2014 - STAT1 cooperative DNA binding - double GAS polymer model The importance of STAT1-cooperative DNA binding in type 1 and type 2 interferon signalling has been studies using experimental and. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagebegitt2014-stat1-cooperative-dna-binding-double-gas-polymer-mode
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_unresolved_signaling_observable_1",
        "label": "Initial Unresolved Signaling Observable 1",
        "units": "native source value",
        "default": 1.09648e-11,
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.initial_unresolved_signaling_observable_1",
        "description": "Initial Unresolved Signaling Observable 1. Sets the initial value of bundled SBML species `S1`."
      },
      {
        "name": "initial_unresolved_signaling_observable_2",
        "label": "Initial Unresolved Signaling Observable 2",
        "units": "native source value",
        "default": "1e-10",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.initial_unresolved_signaling_observable_2",
        "description": "Initial Unresolved Signaling Observable 2. Sets the initial value of bundled SBML species `DNA0000`."
      },
      {
        "name": "initial_unresolved_signaling_observable_3",
        "label": "Initial Unresolved Signaling Observable 3",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.initial_unresolved_signaling_observable_3",
        "description": "Initial Unresolved Signaling Observable 3. Sets the initial value of bundled SBML species `DNA0001`."
      },
      {
        "name": "initial_unresolved_signaling_observable_4",
        "label": "Initial Unresolved Signaling Observable 4",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.initial_unresolved_signaling_observable_4",
        "description": "Initial Unresolved Signaling Observable 4. Sets the initial value of bundled SBML species `DNA0010`."
      },
      {
        "name": "initial_unresolved_signaling_observable_5",
        "label": "Initial Unresolved Signaling Observable 5",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.initial_unresolved_signaling_observable_5",
        "description": "Initial Unresolved Signaling Observable 5. Sets the initial value of bundled SBML species `DNA0100`."
      }
    ],
    "outputs": [
      {
        "name": "unresolved_signaling_observable_1",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.unresolved_signaling_observable_1"
      },
      {
        "name": "unresolved_signaling_observable_2",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.unresolved_signaling_observable_2"
      },
      {
        "name": "unresolved_signaling_observable_3",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.unresolved_signaling_observable_3"
      },
      {
        "name": "unresolved_signaling_observable_4",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.unresolved_signaling_observable_4"
      },
      {
        "name": "unresolved_signaling_observable_5",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.unresolved_signaling_observable_5"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.species_labels"
      }
    ]
  },
  "title": "Begitt2014 - STAT1 cooperative DNA binding - double GAS polymer model Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model",
      "alias": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model_state"
      ],
      "from": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model_summary"
      ],
      "from": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model_species_labels"
      ],
      "from": "immunology_sbml_begitt2014_stat1_cooperative_dna_binding_double_biomd0000000501_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Begitt2014 - STAT1 cooperative DNA binding - double GAS polymer model The importance of STAT1-cooperative DNA binding in type 1 and type 2 interferon signalling has been studies using experimental and. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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