BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Rozi2003 Glycogenphosphorylase Activation Lab

About lab

The model reproduces the temporal evolution of Glycogen phosphorylase for a vale of Vm5=30 as depicted in Fig 1a of the paper. The model makes use of calcium oscillations from the Borghans model to st.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagerozi2003-glycogenphosphorylase-activation-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_extracellular_calcium",
        "label": "Initial Extracellular Calcium",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.initial_extracellular_calcium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EC`."
      },
      {
        "name": "initial_glycogen_phosphorylase",
        "label": "Initial Glycogen Phosphorylase",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.initial_glycogen_phosphorylase",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GP`."
      },
      {
        "name": "initial_model_state_ip3",
        "label": "Initial Model State IP3",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.initial_model_state_ip3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `A`."
      },
      {
        "name": "initial_intravesicular_calcium",
        "label": "Initial Intravesicular Calcium",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.initial_intravesicular_calcium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
      },
      {
        "name": "initial_cytosolic_calcium",
        "label": "Initial Cytosolic Calcium",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.initial_cytosolic_calcium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Z`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.species_labels"
      },
      {
        "name": "extracellular_calcium",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.extracellular_calcium"
      },
      {
        "name": "glycogen_phosphorylase",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.glycogen_phosphorylase"
      },
      {
        "name": "ip3",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.ip3"
      },
      {
        "name": "intravesicular_calcium",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.intravesicular_calcium"
      },
      {
        "name": "cytosolic_calcium",
        "maps_to": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.cytosolic_calcium"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Rozi2003 Glycogenphosphorylase Activation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model",
      "alias": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model_state"
      ],
      "from": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model_summary"
      ],
      "from": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model_species_labels"
      ],
      "from": "systemsbiology_sbml_rozi2003_glycogenphosphorylase_activation_biomd0000000100_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the temporal evolution of Glycogen phosphorylase for a vale of Vm5=30 as depicted in Fig 1a of the paper. The model makes use of calcium oscillations from the Borghans model to st.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.