Teusink2000_Glycolysis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_in_cytosol",
        "units": "native SBML value",
        "default": 0.087,
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.initial_glucose_in_cytosol",
        "description": "Initial condition for glucose in cytosol. Maps to bundled SBML symbol `GLCi`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 2.45,
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_6_phosphate",
        "units": "native SBML value",
        "default": 0.62,
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.initial_fructose_6_phosphate",
        "description": "Initial condition for fructose 6 phosphate. Maps to bundled SBML symbol `F6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_1_6_bisphosphate",
        "units": "native SBML value",
        "default": 5.51,
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.initial_fructose_1_6_bisphosphate",
        "description": "Initial condition for fructose 1 6 bisphosphate. Maps to bundled SBML symbol `F16P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_triose_phosphate",
        "units": "native SBML value",
        "default": 0.96,
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.initial_triose_phosphate",
        "description": "Initial condition for triose phosphate. Maps to bundled SBML symbol `TRIO`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glucose_in_cytosol",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.glucose_in_cytosol"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.glucose_6_phosphate"
      },
      {
        "name": "fructose_6_phosphate",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.fructose_6_phosphate"
      },
      {
        "name": "fructose_1_6_bisphosphate",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.fructose_1_6_bisphosphate"
      },
      {
        "name": "triose_phosphate",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.triose_phosphate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.observable_labels"
      }
    ]
  },
  "title": "Teusink2000_Glycolysis Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model",
      "alias": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model",
      "parameters": {
        "model_path": "data/BIOMD0000000064.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model_observable_values"
      ],
      "from": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model_run_summary"
      ],
      "from": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model_observable_labels"
      ],
      "from": "metabolism_sbml_teusink2000_glycolysis_biomd0000000064_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}