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Nakano2010 Synaptic Plasticity Lab

About lab

This is an SBML version of the model described in: A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity. Nakano T, Doi T, Yoshimoto J, Doya K.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagenakano2010-synaptic-plasticity-lab
Created2026-05-17
Updated2026-05-17
neurosciencephysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_atp",
        "label": "Initial Model State ATP",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.initial_model_state_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
      },
      {
        "name": "initial_ac_gsa_atp",
        "label": "Initial Ac Gsa ATP",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.initial_ac_gsa_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AC_Gsa_ATP`."
      },
      {
        "name": "initial_ac_gsa_ca_atp",
        "label": "Initial Ac Gsa Ca ATP",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.initial_ac_gsa_ca_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ACGsa_Ca_ATP`."
      },
      {
        "name": "initial_cam_total",
        "label": "Initial Cam Total",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.initial_cam_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Cam_total`."
      },
      {
        "name": "initial_ca_m",
        "label": "Initial Ca M",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.initial_ca_m",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM`."
      },
      {
        "name": "initial_ca_mkii",
        "label": "Initial Ca Mkii",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.initial_ca_mkii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaMKII`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.species_labels"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.atp"
      },
      {
        "name": "ac_gsa_atp",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.ac_gsa_atp"
      },
      {
        "name": "ac_gsa_ca_atp",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.ac_gsa_ca_atp"
      },
      {
        "name": "cam_total",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.cam_total"
      },
      {
        "name": "ca_m",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.ca_m"
      },
      {
        "name": "ca_mkii",
        "maps_to": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.ca_mkii"
      }
    ]
  },
  "tags": [
    "neuroscience",
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Nakano2010 Synaptic Plasticity Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model",
      "alias": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model_state"
      ],
      "from": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model_summary"
      ],
      "from": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model_species_labels"
      ],
      "from": "systemsbiology_sbml_nakano2010_synaptic_plasticity_model1101170000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is an SBML version of the model described in: A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity. Nakano T, Doi T, Yoshimoto J, Doya K.",
  "schema_version": "2.0"
}

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