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Gonzalezheydrich1994 - Gonzalez Heydrich Mathematical Hpa Axis Lab

About lab

Source-faithful physiology lab for Gonzalezheydrich, Steingard, Kohane, 1994. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagegonzalezheydrich1994-gonzalez-heydrich-mathematical-hpa-axis-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_corticotropin_releasing_hormone",
        "label": "Initial Corticotropin Releasing Hormone",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.initial_corticotropin_releasing_hormone",
        "description": "Initial value for Corticotropin Releasing Hormone. Maps to source symbol `CRH`. Units: mcg_ml. Naming evidence: source metadata names `CRH` as `corticotropin releasing hormone`.",
        "accepted_units": [
          "mcg_ml"
        ]
      },
      {
        "name": "initial_acetylcholine",
        "label": "Initial Acetylcholine",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.initial_acetylcholine",
        "description": "Initial value for Acetylcholine. Maps to source symbol `ACTH`. Units: mcg_ml. Naming evidence: source metadata names `ACTH` as `acetylcholine`.",
        "accepted_units": [
          "mcg_ml"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.variable_labels"
      },
      {
        "name": "corticotropin_releasing_hormone",
        "label": "Corticotropin Releasing Hormone",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.corticotropin_releasing_hormone",
        "description": "Corticotropin Releasing Hormone. Maps to source symbol `CRH`. Units: mcg_ml. Naming evidence: source metadata names `CRH` as `corticotropin releasing hormone`."
      },
      {
        "name": "acetylcholine",
        "label": "Acetylcholine",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.acetylcholine",
        "description": "Acetylcholine. Maps to source symbol `ACTH`. Units: mcg_ml. Naming evidence: source metadata names `ACTH` as `acetylcholine`."
      },
      {
        "name": "cortisol",
        "label": "Cortisol",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.cortisol",
        "description": "Cortisol. Maps to source symbol `cortisol`. Units: mcg_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acth_k4",
        "label": "Acth K4",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.acth_k4",
        "description": "Acth K4. Maps to source symbol `k4`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acth_k5",
        "label": "Acth K5",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.acth_k5",
        "description": "Acth K5. Maps to source symbol `k5`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "acth_k6",
        "label": "Acth K6",
        "maps_to": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.acth_k6",
        "description": "Acth K6. Maps to source symbol `k6`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Gonzalezheydrich1994 - Gonzalez Heydrich Mathematical Hpa Axis Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model",
      "alias": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model",
      "parameters": {
        "model_path": "data/gonzalezheydrich_steingard_kohane_1994.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model_state"
      ],
      "from": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model_summary"
      ],
      "from": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model_trajectory"
      ],
      "from": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model_variable_labels"
      ],
      "from": "physiology_cellml_gonzalezheydrich_steingard_kohane_1994_gonzalezheydrichsteingardkohane1994_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Gonzalezheydrich, Steingard, Kohane, 1994. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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