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Lee2010 Thrombinactivation Oneform Lab

About lab

Lee2010 Thrombinactivation Oneform

This Biosimulant lab wraps Lee2010 Thrombinactivation Oneform as a runnable systems biology model with a companion visualization module. Chang Jun Lee, Sangwook Wu, Changsun Eun & Lee G. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which source-defined system states dominate this SBML model trajectory? Source model: Lee2010_ThrombinActivation_OneForm. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on E_P_2, E_P_1, E_P21, E_P2, E_P1, and E_M1, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, E_P_1 moved from 0 to 6.26e-05 across 1.0 simulation windows.

Output Visualizations

Lee2010 Thrombinactivation Oneform - run interpretation

Summary table for Lee2010 Thrombinactivation Oneform, reporting the scientific question, observed answer, dominant module, and caveat.

Lee2010 Thrombinactivation Oneform - timeseries visualization

Trajectories of E_P_1, E_P_2, E_P2, E_M1, E_P21, and E_P1 across the 1.0 simulation. In this run E_P_1 climbed from 0 to 6.26e-05 — the largest movements among the focused observables.

Lee2010 Thrombinactivation Oneform - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: E_P_1 = 6.3e-05, E_P_2 = 7.56e-06, E_P2 = 1.84e-09, with 2 more observables below.

Lee2010 Thrombinactivation Oneform - endpoint snapshot bar

Endpoint snapshot of the focused observables — final values from the captured run. Top 3 by value: E_P_1 = 6.26e-05, E_P_2 = 7.53e-06, E_P2 = 1.84e-09, with 2 more observables below.

Lee2010 Thrombinactivation Oneform - visualization

Visualization card from the Lee2010 Thrombinactivation Oneform dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:BIOMD0000000364
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial E P 2systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p_2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol E_P_2.
Initial E P 1systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p_1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol E_P_1.
Initial E P21systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p21Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol E_P21.
Initial E P2systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol E_P2.
Initial E P1systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol E_P1.
Initial E M1systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_m1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol E_M1.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.species_labelsAvailable to the visualization model and downstream workflows.
e_p_2systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p_2Available to the visualization model and downstream workflows.
e_p_1systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p_1Available to the visualization model and downstream workflows.
e_p21systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p21Available to the visualization model and downstream workflows.
e_p2systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p2Available to the visualization model and downstream workflows.
e_p1systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p1Available to the visualization model and downstream workflows.
e_m1systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_m1Available to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

Chang Jun Lee, Sangwook Wu, Changsun Eun & Lee G. It can be used to explore systemsbiology lee2010 thrombinactivation oneform BioModels0000000364 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagelee2010-thrombinactivation-oneform-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_e_p_2",
        "label": "Initial E P 2",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E_P_2`."
      },
      {
        "name": "initial_e_p_1",
        "label": "Initial E P 1",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E_P_1`."
      },
      {
        "name": "initial_e_p21",
        "label": "Initial E P21",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p21",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E_P21`."
      },
      {
        "name": "initial_e_p2",
        "label": "Initial E P2",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E_P2`."
      },
      {
        "name": "initial_e_p1",
        "label": "Initial E P1",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_p1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E_P1`."
      },
      {
        "name": "initial_e_m1",
        "label": "Initial E M1",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.initial_e_m1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `E_M1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.species_labels"
      },
      {
        "name": "e_p_2",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p_2"
      },
      {
        "name": "e_p_1",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p_1"
      },
      {
        "name": "e_p21",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p21"
      },
      {
        "name": "e_p2",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p2"
      },
      {
        "name": "e_p1",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_p1"
      },
      {
        "name": "e_m1",
        "maps_to": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.e_m1"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Lee2010 Thrombinactivation Oneform Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model",
      "alias": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model_state"
      ],
      "from": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model_summary"
      ],
      "from": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model_species_labels"
      ],
      "from": "systemsbiology_sbml_lee2010_thrombinactivation_oneform_biomd0000000364_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Chang Jun Lee, Sangwook Wu, Changsun Eun & Lee G. It can be used to explore systemsbiology lee2010 thrombinactivation oneform BioModels0000000364 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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