Bordbar2011_HumanErythrocyte_MetabolicNetwork Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_observable_3_phospho_d_glyceroyl_phosphate",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.initial_observable_3_phospho_d_glyceroyl_phosphate",
        "description": "Initial condition for observable 3 phospho d glyceroyl phosphate. Maps to bundled SBML symbol `M_13dpg_c`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_observable_2_3_disphospho_d_glycerate",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.initial_observable_2_3_disphospho_d_glycerate",
        "description": "Initial condition for observable 2 3 disphospho d glycerate. Maps to bundled SBML symbol `M_23dpg_c`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_observable_2_keto_4_methylthiobutyrate",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.initial_observable_2_keto_4_methylthiobutyrate",
        "description": "Initial condition for observable 2 keto 4 methylthiobutyrate. Maps to bundled SBML symbol `M_2kmb_c`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_d_glycerate_2_phosphate",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.initial_d_glycerate_2_phosphate",
        "description": "Initial condition for d glycerate 2 phosphate. Maps to bundled SBML symbol `M_2pg_c`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_observable_3_5_cyclic_gmp",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.initial_observable_3_5_cyclic_gmp",
        "description": "Initial condition for observable 3 5 cyclic gmp. Maps to bundled SBML symbol `M_35cgmp_c`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      }
    ],
    "outputs": [
      {
        "name": "observable_3_phospho_d_glyceroyl_phosphate",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_3_phospho_d_glyceroyl_phosphate"
      },
      {
        "name": "observable_2_3_disphospho_d_glycerate",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_2_3_disphospho_d_glycerate"
      },
      {
        "name": "observable_2_keto_4_methylthiobutyrate",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_2_keto_4_methylthiobutyrate"
      },
      {
        "name": "d_glycerate_2_phosphate",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.d_glycerate_2_phosphate"
      },
      {
        "name": "observable_3_5_cyclic_gmp",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_3_5_cyclic_gmp"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_labels"
      }
    ]
  },
  "title": "Bordbar2011_HumanErythrocyte_MetabolicNetwork Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model",
      "alias": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model",
      "parameters": {
        "model_path": "data/MODEL1106080000.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model_observable_values"
      ],
      "from": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model_run_summary"
      ],
      "from": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model_observable_labels"
      ],
      "from": "metabolism_sbml_bordbar2011_humanerythrocyte_metabolicnetwork_model1106080000_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This model is from the article: iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}