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Calzone2007 Drosophila Embryo Cell Cycle Lab

About lab

Early Drosophila embryonic nuclear division cycle model executed directly from the bundled SBML source.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagecalzone2007-drosophila-embryo-cell-cycle-lab
Created2026-05-15
Updated2026-05-15
developmentsbmltelluriumfaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "cytoplasmic_maturation_promoting_factor",
        "label": "Cytoplasmic MPF",
        "maps_to": "calzone2007_cell_cycle.cytoplasmic_maturation_promoting_factor",
        "description": "Cytoplasmic MPF. Maps to SBML symbol `MPFc`."
      },
      {
        "name": "nuclear_maturation_promoting_factor",
        "label": "Nuclear MPF",
        "maps_to": "calzone2007_cell_cycle.nuclear_maturation_promoting_factor",
        "description": "Nuclear MPF. Maps to SBML symbol `MPFn`."
      },
      {
        "name": "cytoplasmic_string_phosphatase",
        "label": "Cytoplasmic String phosphatase",
        "maps_to": "calzone2007_cell_cycle.cytoplasmic_string_phosphatase",
        "description": "Cytoplasmic String phosphatase. Maps to SBML symbol `StgPc`."
      },
      {
        "name": "cytoplasmic_wee_one_kinase",
        "label": "Cytoplasmic Wee1 kinase",
        "maps_to": "calzone2007_cell_cycle.cytoplasmic_wee_one_kinase",
        "description": "Cytoplasmic Wee1 kinase. Maps to SBML symbol `Wee1c`."
      },
      {
        "name": "total_cyclin_b",
        "label": "Total cyclin B",
        "maps_to": "calzone2007_cell_cycle.total_cyclin_b",
        "description": "Total cyclin B. Maps to SBML symbol `CycBT`."
      },
      {
        "name": "nuclear_division_state",
        "label": "Nuclear division state",
        "maps_to": "calzone2007_cell_cycle.nuclear_division_state",
        "description": "Nuclear division state. Maps to SBML symbol `N`."
      },
      {
        "name": "state",
        "maps_to": "calzone2007_cell_cycle.state",
        "description": "Full friendly observable record."
      },
      {
        "name": "summary",
        "maps_to": "calzone2007_cell_cycle.summary",
        "description": "Core model run summary."
      },
      {
        "name": "species_labels",
        "maps_to": "calzone2007_cell_cycle.species_labels",
        "description": "Friendly observable display labels."
      }
    ]
  },
  "title": "Calzone2007 Drosophila Embryo Cell Cycle Lab",
  "models": [
    {
      "path": "owned/models/calzone2007_cell_cycle",
      "alias": "calzone2007_cell_cycle",
      "parameters": {
        "model_path": "data/BIOMD0000000144.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/calzone2007_cell_cycle"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.core_state"
      ],
      "from": "calzone2007_cell_cycle.state"
    },
    {
      "to": [
        "visualisation.core_summary"
      ],
      "from": "calzone2007_cell_cycle.summary"
    },
    {
      "to": [
        "visualisation.core_species_labels"
      ],
      "from": "calzone2007_cell_cycle.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Early Drosophila embryonic nuclear division cycle model executed directly from the bundled SBML source.",
  "schema_version": "2.0"
}

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