About lab
Clean Biosimulant lab for systems signaling model: Yan2012 - Rb-E2F pathway dynamics with miR449. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageyan2012-rb-e2f-pathway-dynamics-with-mir449-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_s_state",
"label": "Initial source-defined S state",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.initial_source_defined_s_state",
"description": "Initial level of source-defined S state. Maps to SBML symbol `S`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "e2f",
"label": "E2F",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.e2f",
"description": "E2F. Maps to SBML symbol `E2F` and is emitted in native SBML units."
},
{
"name": "myc_transcription_factor",
"label": "MYC transcription factor",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.myc_transcription_factor",
"description": "MYC transcription factor. Maps to SBML symbol `Myc` and is emitted in native SBML units."
},
{
"name": "source_defined_cycd_state",
"label": "source-defined CYCD state",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.source_defined_cycd_state",
"description": "source-defined CYCD state. Maps to SBML symbol `CycD` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Yan2012 - Rb-E2F pathway dynamics with miR449 Lab",
"models": [
{
"path": "owned/models/signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model",
"alias": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model_state"
],
"from": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.state"
},
{
"to": [
"visualisation.signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model_summary"
],
"from": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model_species_labels"
],
"from": "signaling_sbml_yan2012_rb_e2f_pathway_dynamics_with_mir449_biomd0000000720_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Yan2012 - Rb-E2F pathway dynamics with miR449. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.