BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Rubin2009 - Multiple Rhythmic States Respiratory Central Pattern Lab

About lab

Source-faithful physiology lab for Rubin, Shevtsova, Ermentrout, Smith and Rybak 2009. Public controls and outputs are mapped to real source symbols for respiratory physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagerubin2009-multiple-rhythmic-states-respiratory-central-pattern-l
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_sodium_h_gate",
        "label": "Initial Sodium H Gate",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.initial_sodium_h_gate",
        "description": "Initial value for Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_potassium_m_gate",
        "label": "Initial Potassium M Gate",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.initial_potassium_m_gate",
        "description": "Initial value for Potassium M Gate. Maps to source symbol `m`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.variable_labels"
      },
      {
        "name": "sodium_h_gate",
        "label": "Sodium H Gate",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.sodium_h_gate",
        "description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_m_gate",
        "label": "Potassium M Gate",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.potassium_m_gate",
        "description": "Potassium M Gate. Maps to source symbol `m`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_v1",
        "label": "Model State V1 (source V1)",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.model_state_v1",
        "description": "Model State V1 (source V1). Maps to source symbol `V1`. Units: millivolt. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_v2",
        "label": "Model State V2 (source V2)",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.model_state_v2",
        "description": "Model State V2 (source V2). Maps to source symbol `V2`. Units: millivolt. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_v3",
        "label": "Model State V3 (source V3)",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.model_state_v3",
        "description": "Model State V3 (source V3). Maps to source symbol `V3`. Units: millivolt. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_v4",
        "label": "Model State V4 (source V4)",
        "maps_to": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.model_state_v4",
        "description": "Model State V4 (source V4). Maps to source symbol `V4`. Units: millivolt. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Rubin2009 - Multiple Rhythmic States Respiratory Central Pattern Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model",
      "alias": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model",
      "parameters": {
        "model_path": "data/rubin_2009.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model_state"
      ],
      "from": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model_summary"
      ],
      "from": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model_trajectory"
      ],
      "from": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model_variable_labels"
      ],
      "from": "physiology_cellml_rubin_shevtsova_ermentrout_smith_and_rybak_2009_rubinshevtsovaermentroutsmithrybak2009_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Rubin, Shevtsova, Ermentrout, Smith and Rybak 2009. Public controls and outputs are mapped to real source symbols for respiratory physiology.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.