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Restif2006 Whooping Cough Lab

About lab

Restif2006 - Whooping cough This model is described in the article: Integrating life history and cross-immunity into the evolutionary dynamics of pathogens. It can be used to explore systemsbiology restif2006 whooping cough BioModels0000000249 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagerestif2006-whooping-cough-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_r_1",
        "label": "Initial Model State R 1",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.initial_model_state_r_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R_1`."
      },
      {
        "name": "initial_model_state_i_1",
        "label": "Initial Model State I 1",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.initial_model_state_i_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `I_1`."
      },
      {
        "name": "initial_model_state_i_2",
        "label": "Initial Model State I 2",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.initial_model_state_i_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `I_2`."
      },
      {
        "name": "initial_model_state_r_p",
        "label": "Initial Model State R P",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.initial_model_state_r_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R_p`."
      },
      {
        "name": "initial_model_state_r_2",
        "label": "Initial Model State R 2",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.initial_model_state_r_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R_2`."
      },
      {
        "name": "initial_i_2_p",
        "label": "Initial I 2 P",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.initial_i_2_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `I_2p`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.species_labels"
      },
      {
        "name": "r_1",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.r_1"
      },
      {
        "name": "i_1",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.i_1"
      },
      {
        "name": "i_2",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.i_2"
      },
      {
        "name": "r_p",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.r_p"
      },
      {
        "name": "r_2",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.r_2"
      },
      {
        "name": "i_2_p",
        "maps_to": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.i_2_p"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Restif2006 Whooping Cough Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model",
      "alias": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model_state"
      ],
      "from": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model_summary"
      ],
      "from": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model_species_labels"
      ],
      "from": "systemsbiology_sbml_restif2006_whooping_cough_biomd0000000249_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Restif2006 - Whooping cough This model is described in the article: Integrating life history and cross-immunity into the evolutionary dynamics of pathogens. It can be used to explore systemsbiology restif2006 whooping cough BioModels0000000249 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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