Smallbone2015 - Multi-scale model of E. coli metabolism Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_phosphoenolpyruvate",
        "units": "native SBML value",
        "default": 2.67,
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.initial_phosphoenolpyruvate",
        "description": "Initial condition for phosphoenolpyruvate. Maps to bundled SBML symbol `PEP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 3.48,
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pyruvate",
        "units": "native SBML value",
        "default": 2.67,
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.initial_pyruvate",
        "description": "Initial condition for pyruvate. Maps to bundled SBML symbol `PYR`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_6_phosphate",
        "units": "native SBML value",
        "default": 0.6,
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.initial_fructose_6_phosphate",
        "description": "Initial condition for fructose 6 phosphate. Maps to bundled SBML symbol `F6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_microbial_metabolism_state_5",
        "units": "native SBML value",
        "default": 0.653,
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.initial_microbial_metabolism_state_5",
        "description": "Initial condition for microbial metabolism state 5. Maps to bundled SBML symbol `G1P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "phosphoenolpyruvate",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.phosphoenolpyruvate"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.glucose_6_phosphate"
      },
      {
        "name": "pyruvate",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.pyruvate"
      },
      {
        "name": "fructose_6_phosphate",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.fructose_6_phosphate"
      },
      {
        "name": "microbial_metabolism_state_5",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.microbial_metabolism_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.observable_labels"
      }
    ]
  },
  "title": "Smallbone2015 - Multi-scale model of E. coli metabolism Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model",
      "parameters": {
        "model_path": "data/MODEL1503050000.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model_observable_values"
      ],
      "from": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model_run_summary"
      ],
      "from": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model_observable_labels"
      ],
      "from": "metabolism_sbml_smallbone2015_multi_scale_model_of_e_coli_metabo_model1503050000_model.observable_labels"
    }
  ],
  "package": "smallbone2015-multi-scale-model-of-e-coli-metabolism",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Metabolism Smallbone2015Multi Scale Model Of EColi Metabo Model1503050000Model captures core biological behavior in the context of metabolism, sbml, biomodels_ebi using a biomodels_ebi-sourced OTHER model. When you run it, you can observe state and evaluate how the modeled system changes across runs.",
  "schema_version": "2.0"
}