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Koivumaki2009 Sercaatpase Short Lab

About lab

This a model from the article: Modelling sarcoplasmic reticulum calcium ATPase and its regulation in cardiacmyocytes. Koivumaki JT, Takalo J, Korhonen T, Tavi P, Weckstrom M.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekoivumaki2009-sercaatpase-short-lab
Created2026-05-17
Updated2026-05-17
cardiovascularmetabolismphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_plb_dephosph",
        "label": "Initial Plb Dephosph",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_plb_dephosph",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLB_dephosph`."
      },
      {
        "name": "initial_ltrpn",
        "label": "Initial Ltrpn",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_ltrpn",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LTRPN`."
      },
      {
        "name": "initial_ca_serca",
        "label": "Initial Ca Serca",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_ca_serca",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_serca`."
      },
      {
        "name": "initial_ca_cyt",
        "label": "Initial Ca Cyt",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_ca_cyt",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_cyt`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.species_labels"
      },
      {
        "name": "plb_dephosph",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.plb_dephosph"
      },
      {
        "name": "ltrpn",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.ltrpn"
      },
      {
        "name": "ca_serca",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.ca_serca"
      },
      {
        "name": "ca_cyt",
        "maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.ca_cyt"
      }
    ]
  },
  "tags": [
    "cardiovascular",
    "metabolism",
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Koivumaki2009 Sercaatpase Short Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model",
      "alias": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model_state"
      ],
      "from": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model_summary"
      ],
      "from": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model_species_labels"
      ],
      "from": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Modelling sarcoplasmic reticulum calcium ATPase and its regulation in cardiacmyocytes. Koivumaki JT, Takalo J, Korhonen T, Tavi P, Weckstrom M.",
  "schema_version": "2.0"
}

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