About lab
Source-faithful physiology lab for Gross and Hopfer, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagegross1998-voltage-cosubstrate-dependence-na-hco3-cotransporter-l
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_6_temp",
"label": "Initial C 6 Temp",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.initial_c_6_temp",
"description": "Initial value for C 6 Temp. Maps to source symbol `C_6_temp`. Units: pmol_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"pmol_per_cm2"
]
},
{
"name": "initial_model_state_c_1",
"label": "Initial Model State C 1 (source C_1)",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.initial_model_state_c_1",
"description": "Initial value for Model State C 1 (source C_1). Maps to source symbol `C_1`. Units: pmol_per_cm2. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"pmol_per_cm2"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: volt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "i_nbc_ss",
"label": "I Nbc Ss",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.i_nbc_ss",
"description": "I Nbc Ss. Maps to source symbol `I_NBC_SS`. Units: pA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_sodium",
"label": "Extracellular Sodium",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.extracellular_sodium",
"description": "Extracellular Sodium. Maps to source symbol `Na_o`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "i_nbc",
"label": "I Nbc",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.i_nbc",
"description": "I Nbc. Maps to source symbol `I_NBC`. Units: pA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c_6_temp",
"label": "C 6 Temp",
"maps_to": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.c_6_temp",
"description": "C 6 Temp. Maps to source symbol `C_6_temp`. Units: pmol_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Gross1998 - Voltage Cosubstrate Dependence Na Hco3 Cotransporter Lab",
"models": [
{
"path": "owned/models/physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model",
"alias": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model",
"parameters": {
"model_path": "data/gross_and_hopfer_1998.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model_state"
],
"from": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.state"
},
{
"to": [
"visualisation.physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model_summary"
],
"from": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model_trajectory"
],
"from": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model_variable_labels"
],
"from": "physiology_cellml_gross_and_hopfer_1998_grossandhopfer1998_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Gross and Hopfer, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
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