About lab
Clean Biosimulant lab for systems signaling model: Yapo2017 - A2AR/cAMP/PKA signalling in D2 dopamine receptor expressing medium-spiny neurons. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
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Metadata
Packageyapo2017-a2ar-camp-pka-signalling-in-d2-dopamine-receptor-expres
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicamp-pkagpcrneurosciencephysiologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_adenosine",
"label": "Initial adenosine",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.initial_adenosine",
"description": "Initial level of adenosine. Maps to SBML symbol `Adn`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_amp",
"label": "Initial AMP",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.initial_amp",
"description": "Initial level of AMP. Maps to SBML symbol `AMP`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_atp",
"label": "Initial ATP",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.initial_atp",
"description": "Initial level of ATP. Maps to SBML symbol `ATP`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "camp",
"label": "cAMP",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.camp",
"description": "cAMP. Maps to SBML symbol `cAMP` and is emitted in native SBML units."
},
{
"name": "pde10_c_amp",
"label": "PDE10 C AMP",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.pde10_c_amp",
"description": "PDE10 C AMP. Maps to SBML symbol `PDE10_cAMP` and is emitted in native SBML units."
},
{
"name": "pkac_amp2",
"label": "Pkac AMP2",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.pkac_amp2",
"description": "Pkac AMP2. Maps to SBML symbol `PKAcAMP2` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"camp-pka",
"gpcr",
"neuroscience",
"physiology"
],
"title": "Yapo2017 - A2AR/cAMP/PKA signalling in D2 dopamine receptor expressing medium-spiny neurons Lab",
"models": [
{
"path": "owned/models/signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model",
"alias": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model_state"
],
"from": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model_summary"
],
"from": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model_species_labels"
],
"from": "signaling_sbml_yapo2017_a2ar_camp_pka_signalling_in_d2_dopamine_model1701170001_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Yapo2017 - A2AR/cAMP/PKA signalling in D2 dopamine receptor expressing medium-spiny neurons. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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