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Martins2003 Amadoridegradation Lab

About lab

This a model from the article: Kinetic modelling of Amadori N-(1-deoxy-D-fructos-1-yl)-glycine degradation pathways. It can be used to explore systemsbiology martins2003 amadoridegradation BioModels0000000050 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemartins2003-amadoridegradation-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_dfg",
        "label": "Initial Model State Dfg",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_dfg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DFG`."
      },
      {
        "name": "initial_model_state_mel",
        "label": "Initial Model State Mel",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_mel",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mel`."
      },
      {
        "name": "initial_model_state_man",
        "label": "Initial Model State Man",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_man",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Man`."
      },
      {
        "name": "initial_model_state_mg",
        "label": "Initial Model State Mg",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_mg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MG`."
      },
      {
        "name": "initial_model_state_gly",
        "label": "Initial Model State Gly",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_gly",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Gly`."
      },
      {
        "name": "initial_model_state_glu",
        "label": "Initial Model State Glu",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_glu",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Glu`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.species_labels"
      },
      {
        "name": "dfg",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.dfg"
      },
      {
        "name": "mel",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.mel"
      },
      {
        "name": "man",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.man"
      },
      {
        "name": "model_state_mg",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.model_state_mg"
      },
      {
        "name": "gly",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.gly"
      },
      {
        "name": "glu",
        "maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.glu"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Martins2003 Amadoridegradation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model",
      "alias": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model_state"
      ],
      "from": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model_summary"
      ],
      "from": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model_species_labels"
      ],
      "from": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Kinetic modelling of Amadori N-(1-deoxy-D-fructos-1-yl)-glycine degradation pathways. It can be used to explore systemsbiology martins2003 amadoridegradation BioModels0000000050 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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