About lab
This a model from the article: Kinetic modelling of Amadori N-(1-deoxy-D-fructos-1-yl)-glycine degradation pathways. It can be used to explore systemsbiology martins2003 amadoridegradation BioModels0000000050 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemartins2003-amadoridegradation-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_dfg",
"label": "Initial Model State Dfg",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_dfg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DFG`."
},
{
"name": "initial_model_state_mel",
"label": "Initial Model State Mel",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_mel",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Mel`."
},
{
"name": "initial_model_state_man",
"label": "Initial Model State Man",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_man",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Man`."
},
{
"name": "initial_model_state_mg",
"label": "Initial Model State Mg",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_mg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MG`."
},
{
"name": "initial_model_state_gly",
"label": "Initial Model State Gly",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_gly",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Gly`."
},
{
"name": "initial_model_state_glu",
"label": "Initial Model State Glu",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.initial_model_state_glu",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Glu`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.species_labels"
},
{
"name": "dfg",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.dfg"
},
{
"name": "mel",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.mel"
},
{
"name": "man",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.man"
},
{
"name": "model_state_mg",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.model_state_mg"
},
{
"name": "gly",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.gly"
},
{
"name": "glu",
"maps_to": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.glu"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Martins2003 Amadoridegradation Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model",
"alias": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model_state"
],
"from": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model_summary"
],
"from": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model_species_labels"
],
"from": "systemsbiology_sbml_martins2003_amadoridegradation_biomd0000000050_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This a model from the article: Kinetic modelling of Amadori N-(1-deoxy-D-fructos-1-yl)-glycine degradation pathways. It can be used to explore systemsbiology martins2003 amadoridegradation BioModels0000000050 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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