Download agent skills
Install public Biosimulant skills for model requirements, technical specifications, CLI use, lab authoring, scientific publishing, runtime validation, README, and Hub workflows.
Skill pack
Router, focused skills, and specification packages
The public pack separates model requirements, technical specifications, CLI usage, lab authoring, scientific publishing, runtime-specific rules, and README/Hub publishing. MRS and MTS are complete ZIP packages so their templates, references, and validation scripts stay together.
Install the router plus all focused Biosimulant skills so agents can choose the right instructions for CLI, authoring, runtime validation, README generation, and Hub publication.
mkdir -p ~/.claude/skills/biosimulant && for f in biosimulant biosimulant-cli biosimulant-lab-authoring biosimulant-scientific-publishing biosimulant-sbml biosimulant-cellml biosimulant-onnx biosimulant-custom-models biosimulant-readme-publish; do curl -fsSL https://www.biosimulant.com/download/skills/$f.md -o ~/.claude/skills/biosimulant/$f.md; doneInstall the complete MRS and MTS packages for Codex. Each archive includes its templates, references, and validation scripts.
mkdir -p ~/.codex/skills && for f in create-mrs create-mts; do curl -fsSL https://www.biosimulant.com/download/skills/$f.zip -o /tmp/$f.zip && unzip -oq /tmp/$f.zip -d ~/.codex/skills; doneBiosimulant Skill Router
recommendedRoute Biosimulant tasks to the right public skill for model requirements, technical specifications, CLI use, lab authoring, scientific publishing, and runtime-specific model work.
biosimulant.md · version 2026.08.28
sha256:6d0c50142b9378631dde8f5952cb393146485eb7df297b6ac60603504d733741Biosimulant CLI
recommendedUse the canonical headless biosimulant CLI for labs, runs, registries, validation, publishing, and automation across local terminals, Desktop, Cloud Studio, CI, and servers.
biosimulant-cli.md · version 2026.08.08
sha256:026f91cb342e19f4a5f3eca106410ef6a29874be1c74325b910c26e414286490Biosimulant Lab Authoring
recommendedCreate or restructure Biosimulant labs and models with clean manifests, stable layout, explicit wiring, friendly ports, and validation-ready source trees.
biosimulant-lab-authoring.md · version 2026.05.23
sha256:6a1ce6af4112de6f20d609e751813ae096d7d8fba1cfbccd3244be3a0dceeac4Biosimulant Scientific Publishing
recommendedApply the publish-worthy quality bar for scientific Biosimulant labs: source-faithful, runnable, traceable, documented, visual, and conservative about claims.
biosimulant-scientific-publishing.md · version 2026.05.23
sha256:d95a62bfc4d24ca93c37830bd539ac38b93ea5263cef729e1488b30783418656Biosimulant SBML Labs
Create and polish SBML-backed Biosimulant labs using TelluriumSBMLBioModule while preserving SBML source fidelity.
biosimulant-sbml.md · version 2026.05.23
sha256:65675a7cb1ea4056392eec5c53606854f96c4006c37f49888237b79f05136930Biosimulant CellML Labs
Create and polish CellML-backed Biosimulant labs using LibCellMLBioModule, libCellML validation/codegen, and source-faithful runtime outputs.
biosimulant-cellml.md · version 2026.05.23
sha256:25e68e4f0410b3dbf013be1251efdc9871ee8e5466a313cb91fb7fb7a0c449a3Biosimulant ONNX Labs
Create and polish ONNX-backed Biosimulant labs with ONNX Runtime validation, graph-contract ports, conservative labels, and visual summaries.
biosimulant-onnx.md · version 2026.05.23
sha256:f3d28836f7adac58295791dc651eabf9cf7f481515b9de34c09fe01be0b04a65Biosimulant Custom Models
Create and review custom Python, VirtualCell-style, and mixed-source Biosimulant labs with documented equations, assumptions, tests, and manual-review rules.
biosimulant-custom-models.md · version 2026.05.23
sha256:d778bfeac3fdfb41fd1c8f77b091c33b396d2ccbfcdf68ec6ce7728126c69630Biosimulant README And Publishing
recommendedDocument real lab outputs, publish immutable lab versions with the canonical CLI, and verify the resulting registry metadata.
biosimulant-readme-publish.md · version 2026.07.29
sha256:27bab51f160db0a714809387d48c47bd5a8ca6fbb51670be135b6fd926fc3f2aCreate Model Requirements Specification
recommendedCreate or revise a Model Requirements Specification (MRS) for a biological or computational model from scientific briefs, assay/data evidence, and intended-use decisions. Use when defining what the model must do and what evidence will establish acceptance; do not use for implementation design or an MTS.
create-mrs.zip · version 2026.08.28 · complete package · 14 files
sha256:cd3d2d75e5a1a964a5a2dfe7c48ccacbbdb1ddbb4515ea4823af425700cc1126Create Modeling Technical Specification
recommendedCreate or revise a Modeling Technical Specification (MTS) that implements an approved Model Requirements Specification for a biological or computational model. Use when defining architecture, methods, interfaces, verification, reproducibility, delivery, Biosimulant fit, and operations; do not use to invent or weaken MRS acceptance requirements.
create-mts.zip · version 2026.08.28 · complete package · 15 files
sha256:fe62c1b875bb6e4b0b0edce6f5088a6454c8fdab7de3c9c2c226c75775dd94b4| Model requirements and acceptance evidence | create-mrs |
| Architecture for an approved MRS | create-mts |
| General CLI work | biosimulant-cli.md |
| Clean lab/model authoring | biosimulant-lab-authoring.md |
| Publish-worthy scientific quality | biosimulant-scientific-publishing.md |
| SBML, CellML, ONNX, custom | Use the matching runtime-specific skill |
| README screenshots and Hub run gate | biosimulant-readme-publish.md |
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- Research teams building reusable virtual experiments instead of one-off simulations.
- Simulation groups that need inspectable workflows, reproducible runs, and shared review loops.
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